Codon Usage in Hemoglobin Coding Genes
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Hemoglobin is a protein responsible for the transport of oxygen. The preference of hemoglobin coding gene is analyzed by CodonW. The relationship between the A3 / (A3 + T3) and G3 / (G3 + C3) and the relationship between GC12 and GC3 are all investigated. Finally, the preference of hemoglobin coding gene is shown and discussed. The results show that codon use preference of CUG, CGU, UAA, ACC, GUG and GGC are greater than 2.5. This information facilitates an improved understanding of the structural, functional of hemoglobin
Snawar Hussain, Sahibzada Tasleem Rasool. Analysis of synonymous codon usage in Zika virus. Acta Tropica, 2017, 173: 136-146
Monisha Nath Choudhury, Arif Uddin, Supriyo Chakraborty. Codon usage bias and its influencing factors for Y-linked genes in human. Computational Biology and Chemistry, 2017, 69: 77-86
Arif Uddin, Supriyo Chakraborty. Codon usage trend in mitochondrial CYB gene. Gene, 2016, 586(1): 105-114
Supriyo Chakraborty, Arif Uddin, Monisha Nath Choudhury. Factors affecting the codon usage bias of SRY gene across mammals Gene, 2017, 630: 13-20
Xin Xu, Dongliang Fei, Huansheng Han, Honggui Liu, Hua Zhang. Comparative characterization analysis of synonymous codon usage bias in classical swine fever virus. Microbial Pathogenesis, 2017, 107: 368-371
Niraj K. Singh, Anuj Tyagi, Rajinder Kaur, Ramneek Verma, Praveen K. Gupta. Characterization of codon usage pattern and influencing factors in Japanese encephalitis virus. Virus Research, 2016, 221: 58-65
Uladzimir U. Karniychuk. Analysis of the synonymous codon usage bias in recently emerged enterovirus D68 strains. Virus Research, 2016, 223: 73-79
Yu Xu, Renyong Jia, Zhilong Zhang, Yanyan Lu, Anchun Cheng. Analysis of synonymous codon usage pattern in duck circovirus. Gene, 2015, 557(2): 138-145
Sudhir Morla, Aditi Makhija, Sachin Kumar. Synonymous codon usage pattern in glycoprotein gene of rabies virus. Gene, 2016, 584(1): 1-6
Gonzalo Moratorio, Andrés Iriarte, Pilar Moreno, Héctor Musto, Juan Cristina. A detailed comparative analysis on the overall codon usage patterns in West Nile virus. Infection, Genetics and Evolution, 2013, 14: 396-400
Arup Kumar Malakar, Binata Halder, Prosenjit Paul, Supriyo Chakraborty. Cytochrome P450 genes in coronary artery diseases: Codon usage analysis reveals genomic GC adaptation. Gene, 2016, 590(1): 35-43
Changyuan Hu, Jing Chen, Lulu Ye, Renpin Chen, Xiangyang Xue. Codon usage bias in human cytomegalovirus and its biological implication. Gene, 2014, 545(1): 5-14
Abhishek Subramanian, Ram Rup Sarkar. Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions. Genomics, 2015, 106(4): 232-241
Max L. Nibert. Mitovirus UGA(Trp) codon usage parallels that of host mitochondria. Virology, 2017, 507: 96-100
Devi Lal, Mansi Verma, Susanta K. Behura, Rup Lal. Codon usage bias in phylum Actinobacteria: relevance to environmental adaptation and host pathogenicity. Research in Microbiology, 2016, 167(8): 669-677
Mei He, Chun-Bo Teng. Divergence and codon usage bias of Betanodavirus, a neurotropic pathogen in fish. Molecular Phylogenetics and Evolution, 2015, 83: 137-142
Sheng-Lin Shi, Yi-Ren Jiang, Rui-Sheng Yang, Yong Wang, Li Qin. Codon usage in Alphabaculovirus and Betabaculovirus hosted by the same insect species is weak, selection dominated and exhibits no more similar patterns than expected. Infection, Genetics and Evolution, 2016, 44: 412-417
Peden, J.F., 1999. CodonW. (PhD Thesis). University of Nottingham, Nottinghamshire.
Yang Liang, Mei He, Chun-Bo Teng. Evolution of the vesicular stomatitis viruses: Divergence and codon usage bias. Virus Research, 2014, 192: 46-51
Arghya Kamal Bishal, Rashmi Mukherjee, Chandan Chakraborty. Synonymous codon usage pattern analysis of Hepatitis D virus. Virus Research, 2013, 173(2): 350-353
Laura Kubatko, Premal Shah, Radu Herbei, Michael A. Gilchrist. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution, 2016, 94: 290-297
Jasmine Saini, Uri Hershberg. B cell Variable genes have evolved their codon usage to focus the targeted patterns of somatic mutation on the complementarity determining regions. Molecular Immunology, 2015, 65(1): 157-167
Tonghai Yu, Jinsong Li, Yang Yang, Liu Qi. Codon usage patterns and adaptive evolution of marine unicellular cyanobacteria Synechococcus and Prochlorococcus. Molecular Phylogenetics and Evolution, 2012, 62(1): 206-213
Ratna Prabha, Dhananjaya P. Singh, Swati Sinha, Khurshid Ahmad, Anil Rai. Genome-wide comparative analysis of codon usage bias and codon context patterns among cyanobacterial genomes. Marine Genomics, 2017, 32: 31-39